Getting Started

ElPoly

Create an intial system: edit Polymers.conf in the same directory and run

ElPoly -x resume.dat

Study the properties of a system:

ElPoly resume.dat

The option can be either specified in the argument list with a dash in the front

ElPoly resume.dat -d part

or in the command line:

[marelli@Hoshi]-(Examples) $ ElPoly resume.dat 
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# NPart 7500 NType 0 NChain 511 NPCh 2410 Asymmetry 7499 Edge: [12 12 18] rho 6 chiN 30 kappaN 70 
Nano 64 (# 4) (1.000000 1.000000 4.000000) NBlock 1 NFile 1
# SysType) Edge 1 Sys (Txvl 1 Xvt 0) 

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ElPoly> 

Visualizza

Run Visualizza specifing the argument list and the config file with "-c"

Visualizza SpectrumBilayer*.dat FittedData*.dat -c PlotDef.txt &

UsaMatematica

The same analysis tools of Visualizza can be run by UsaMatematica specifing a command with the double dash in the front or typing the command in the command line:

UsaMatematica -x 1 -y 2 --exec x/6 y/35.2  DistMinSepRaw.dat -o Temp.dat
UsaMatematica --smoothGauss Temp.dat -o DistMinSep.dat

DrImage

Movie effects applied on a .png image. In the following example we run a Lennard-Jones simulation using squares of pixel as particles.

DrImage Picture.png -l

DrEffect

Load a picture to apply the different filters and picture analysis

DrEffect Picture.tif

Dinamica

Run a simulation on a specific system with a specific integrator:

Dinamica -c DynMC.conf -i resume.dat -d 

The option can be either specified in the argument list with a dash in the front or in the command line: "-d" display, "-r" run, "--Tens" tension profile, "--AvForces" average forces...

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